Mercurial > repos > peterjc > mira4_assembler
diff tools/mira4/mira4_de_novo.xml @ 15:b0ffe0e7282b draft
Uploaded v0.0.2 preview 7, fixed bash syntax error
author | peterjc |
---|---|
date | Thu, 20 Feb 2014 05:07:19 -0500 |
parents | 133b863a8a40 |
children | 5bbaa930d7fa |
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--- a/tools/mira4/mira4_de_novo.xml Mon Feb 17 06:12:41 2014 -0500 +++ b/tools/mira4/mira4_de_novo.xml Thu Feb 20 05:07:19 2014 -0500 @@ -34,7 +34,7 @@ <option value="pcbiolq">PacBio low quality (raw)</option> <option value="pcbiohq">PacBio high quality (corrected)</option> <option value="text">Synthetic reads (database entries, consensus sequences, artifical reads, etc)</option> - <!-- TODO reference/backbone as an entry here? --> + <!-- TODO reference/backbone as an entry here? --> </param> <conditional name="segments"> <param name="type" type="select" label="Are these paired reads?"> @@ -64,8 +64,8 @@ </when> <when value="none" /><!-- no further questions --> </conditional> - <param name="filenames" type="data" format="fastq,mira" multiple="true" required="true" label="Read file(s)" - help="Multiple files allowed, for example paired reads can be given as two files (MIRA looks at read names to identify pairs)." /> + <param name="filenames" type="data" format="fastq,mira" multiple="true" required="true" label="Read file(s)" + help="Multiple files allowed, for example paired reads can be given as two files (MIRA looks at read names to identify pairs)." /> </repeat> </inputs> <code file="mira4_validator.py" /> @@ -161,10 +161,10 @@ <output name="out_fasta" file="U13small_m.mira4_de_novo.fasta" ftype="fasta" /> </test> --> - <!-- Simple assembly based on MIRA's minidemo/solexa1 example + <!-- Simple assembly based on MIRA's minidemo/solexa1 example Note we're using just one repeat group, but two parameters within the repeat (filename, no pairing) - --> + --> <test> <param name="job_type" value="genome" /> <param name="job_quality" value="accurate" />