--- a/tools/mira4/mira4_de_novo.xml	Tue Mar 25 07:37:50 2014 -0400
+++ b/tools/mira4/mira4_de_novo.xml	Wed May 21 06:56:06 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="mira_4_0_de_novo" name="MIRA v4.0 de novo assember" version="0.0.2">
+<tool id="mira_4_0_de_novo" name="MIRA v4.0 de novo assember" version="0.0.3">
     <description>Takes Sanger, Roche 454, Solexa/Illumina, Ion Torrent and PacBio reads</description>
     <requirements>
         <requirement type="binary">mira</requirement>
@@ -82,7 +82,7 @@
         <configfile name="manifest">
 project = MIRA
 job = denovo,${job_type},${job_quality}
-parameters = -NW:cmrnl=no -DI:trt=/tmp
+parameters = -NW:cmrnl=no -DI:trt=/tmp -OUT:orc=no
 ## -GE:not is short for -GENERAL:number_of_threads and using one (1)
 ## can be useful for repeatability of assemblies and bug hunting.
 ## This is overriden by the command line -t switch which is easier
@@ -95,6 +95,9 @@
 ## -DI:trt is short for -DIRECTORY:tmp_redirected_to and should
 ## point to a local hard drive (not something like NFS on network).
 ## We replace /tmp with an environment variable via mira4.py
+##
+## -OUT:orc=no is short for -OUTPUT:output_result_caf=no 
+## which turns off an output file we don't want anyway.
 
 #for $rg in $read_group