Mercurial > repos > peterjc > mira4_assembler

diff tools/mira4_0/mira4_convert.py @ 34:0785a6537f3e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit 6405ba93fcec7ea93452bf54d559c7507ee7a57c
author peterjc
date Wed, 07 Jun 2017 12:33:39 -0400
parents 56b421d59805
children 259891fce7fd
line wrap: on
line diff
--- a/tools/mira4_0/mira4_convert.py	Fri Jun 02 11:22:01 2017 -0400
+++ b/tools/mira4_0/mira4_convert.py	Wed Jun 07 12:33:39 2017 -0400
@@ -29,7 +29,8 @@
     # Avoid using shell=True when we call subprocess to ensure if the Python
     # script is killed, so too is the child process.
     try:
-        child = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
+        child = subprocess.Popen(cmd, universal_newlines=True,
+                                 stdout=subprocess.PIPE, stderr=subprocess.PIPE)
     except Exception as err:
         sys.exit("Error invoking command:\n%s\n\n%s\n" % (" ".join(cmd), err))
     # Use .communicate as can get deadlocks with .wait(),