Mercurial > repos > peterjc > mira4_assembler

comparison tools/mira4/mira4.py @ 5:ffefb87bd414 draft

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Uploaded v0.0.1 preview 5, using MIRA 4.0 RC4, supports segment_placement (pairing type)
author peterjc
date Tue, 15 Oct 2013 12:07:34 -0400
parents df86ed992a1b
children 902f01c1084b
comparison
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4:df86ed992a1b 5:ffefb87bd414
29 ver, tmp = child.communicate() 29 ver, tmp = child.communicate()
30 del child 30 del child
31 return ver.split("\n", 1)[0] 31 return ver.split("\n", 1)[0]
32 32
33 33
34 os.environ["PATH"] = "/mnt/galaxy/downloads/mira_4.0rc3_linux-gnu_x86_64_static/bin/:%s" % os.environ["PATH"] 34 os.environ["PATH"] = "/mnt/galaxy/downloads/mira_4.0rc4_linux-gnu_x86_64_static/bin/:%s" % os.environ["PATH"]
35 mira_binary = "mira" 35 mira_binary = "mira"
36 mira_ver = get_version(mira_binary) 36 mira_ver = get_version(mira_binary)
37 if not mira_ver.strip().startswith("4.0"): 37 if not mira_ver.strip().startswith("4.0"):
38 stop_err("This wrapper is for MIRA V4.0, not:\n%s" % mira_ver) 38 stop_err("This wrapper is for MIRA V4.0, not:\n%s" % mira_ver)
39 if "-v" in sys.argv: 39 if "-v" in sys.argv or "--version" in sys.argv:
40 print "MIRA wrapper version %s," % WRAPPER_VER 40 print "%s, MIRA wrapper version %s" % (mira_ver, WRAPPER_VER)
41 print mira_ver
42 sys.exit(0) 41 sys.exit(0)
43 42
44 43
45 def log_manifest(manifest): 44 def log_manifest(manifest):
46 """Write the manifest file to stderr.""" 45 """Write the manifest file to stderr."""