Mercurial > repos > peterjc > mira4_assembler

comparison tools/mira4/mira4_mapping.xml @ 15:b0ffe0e7282b draft

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Uploaded v0.0.2 preview 7, fixed bash syntax error
author peterjc
date Thu, 20 Feb 2014 05:07:19 -0500
parents 7fcabeeca5df
children 5bbaa930d7fa
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14:133b863a8a40 15:b0ffe0e7282b
23 </param> 23 </param>
24 <param name="job_quality" type="select" label="Assembly quality grade"> 24 <param name="job_quality" type="select" label="Assembly quality grade">
25 <option value="accurate">Accurate</option> 25 <option value="accurate">Accurate</option>
26 <option value="draft">Draft</option> 26 <option value="draft">Draft</option>
27 </param> 27 </param>
28 <!-- TODO? Allow technology type for references? --> 28 <!-- TODO? Allow technology type for references? -->
29 <!-- TODO? Allow strain settings for reference(s) and reads? --> 29 <!-- TODO? Allow strain settings for reference(s) and reads? -->
30 <!-- TODO? Use a repeat to allow for multi-strain references? --> 30 <!-- TODO? Use a repeat to allow for multi-strain references? -->
31 <!-- TODO? Add strain to the mapping read groups? --> 31 <!-- TODO? Add strain to the mapping read groups? -->
32 <param name="references" type="data" format="fasta,fastq,mira" multiple="true" required="true" label="Backbone reference file(s)" 32 <param name="references" type="data" format="fasta,fastq,mira" multiple="true" required="true" label="Backbone reference file(s)"
33 help="Multiple files allowed, for example one FASTA file per chromosome or plasmid." /> 33 help="Multiple files allowed, for example one FASTA file per chromosome or plasmid." />
34 <param name="strain_setup" type="select" label="Strain configuration (reference vs reads)"> 34 <param name="strain_setup" type="select" label="Strain configuration (reference vs reads)">
35 <option value="default">Different strains - mapping reads onto a related reference ('StrainX' vs 'ReferenceStrain')</option> 35 <option value="default">Different strains - mapping reads onto a related reference ('StrainX' vs 'ReferenceStrain')</option>
36 <option value="same">Same strain - mapping reads from same reference (all 'StrainX')</option> 36 <option value="same">Same strain - mapping reads from same reference (all 'StrainX')</option>
37 </param> 37 </param>