Mercurial > repos > peterjc > mira4_assembler

comparison tools/mira4/README.rst @ 12:a6a56440567c draft

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Uploaded v0.0.2 preview 4, now using MIRA 4.0 (not RC), and sets MIRA4 environment variable during install.
author peterjc
date Mon, 03 Feb 2014 06:25:35 -0500
parents 02350bef2e99
children 7fcabeeca5df
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11:02350bef2e99 12:a6a56440567c
54 this to ``tools_conf.xml.sample`` in order to run the tests:: 54 this to ``tools_conf.xml.sample`` in order to run the tests::
55 55
56 <tool file="mira4/mira4_de_novo.xml" /> 56 <tool file="mira4/mira4_de_novo.xml" />
57 <tool file="mira4/mira4_mapping.xml" /> 57 <tool file="mira4/mira4_mapping.xml" />
58 58
59 You will also need to install MIRA, we used version 4.0 RC5, and define the 59 You will also need to install MIRA, we used version 4.0, and define the
60 environment variable ``$MIRA4`` pointing at the folder containing the binaries. 60 environment variable ``$MIRA4`` pointing at the folder containing the binaries.
61 See: 61 See:
62 62
63 * http://chevreux.org/projects_mira.html 63 * http://chevreux.org/projects_mira.html
64 * http://sourceforge.net/projects/mira-assembler/ 64 * http://sourceforge.net/projects/mira-assembler/
83 ======= ====================================================================== 83 ======= ======================================================================
84 Version Changes 84 Version Changes
85 ------- ---------------------------------------------------------------------- 85 ------- ----------------------------------------------------------------------
86 v0.0.1 - Initial version (prototype for MIRA 4.0 RC4, based on wrapper for v3.4) 86 v0.0.1 - Initial version (prototype for MIRA 4.0 RC4, based on wrapper for v3.4)
87 v0.0.2 - Include BAM output (using ``miraconvert`` and ``samtools``). 87 v0.0.2 - Include BAM output (using ``miraconvert`` and ``samtools``).
88 - Updated to target MIRA 4.0 RC5 88 - Updated to target MIRA 4.0
89 ======= ====================================================================== 89 ======= ======================================================================
90 90
91 91
92 Developers 92 Developers
93 ========== 93 ==========