Mercurial > repos > peterjc > mira4_assembler

comparison tools/mira4/tool_dependencies.xml @ 10:79759fdec6cb draft

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Uploaded v0.0.2 preview 2, attempt auto-install for 64 bit Mac OS X.
author peterjc
date Tue, 10 Dec 2013 06:26:19 -0500
parents 302d13490b23
children 02350bef2e99
comparison
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9:302d13490b23 10:79759fdec6cb
3 <package name="samtools" version="0.1.19"> 3 <package name="samtools" version="0.1.19">
4 <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="MIRA" version="4.0"> 6 <package name="MIRA" version="4.0">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions_group>
9 <action type="download_by_url">https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0rc4_linux-gnu_x86_64_static.tar.bz2</action> 9 <!-- Download the binaries for MIRA compatible with 64-bit OSX. -->
10 <action type="move_directory_files"> 10 <actions architecture="x86_64" os="darwin">
11 <source_directory>bin</source_directory> 11 <action type="download_by_url">https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0rc5_darwin13.0.0_x86_64_static.tar.bz2</action>
12 <destination_directory>$INSTALL_DIR</destination_directory> 12 <action type="move_directory_files">
13 <source_directory>bin</source_directory>
14 <destination_directory>$INSTALL_DIR</destination_directory>
15 </action>
16 </actions>
17 <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
18 <actions architecture="x86_64" os="linux">
19 <action type="download_by_url">https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0rc4_linux-gnu_x86_64_static.tar.bz2</action>
20 <action type="move_directory_files">
21 <source_directory>bin</source_directory>
22 <destination_directory>$INSTALL_DIR</destination_directory>
23 </action>
24 </actions>
25 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
26 <actions>
27 <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action>
28 <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action>
29 <action type="shell_command">uname</action>
30 <action type="shell_command">arch</action>
31 <action type="shell_command">echo If pre-compiled MIRA binaries are now available for this, please report this</action>
32 <action type="shell_command">echo via https://github.com/peterjc/pico_galaxyt/issues - thank you!</action>
33 <action type="shell_command">false</action>
34 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
35 </actions>
36 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
37 <action type="set_environment">
38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
13 </action> 39 </action>
14 <action type="set_environment"> 40 </actions_group>
15 <environment_variable action="set_to" name="MIRA4">$INSTALL_DIR</environment_variable>
16 </action>
17 </actions>
18 </install> 41 </install>
19 <readme> 42 <readme>
20 Downloads MIRA v4.0 from Sourceforge, requesting Bastien's precompiled binaries 43 Downloads MIRA v4.0 from Sourceforge, requesting Bastien's precompiled binaries
21 for 64bit Linux (x86_64). He also has binaries for Mac OS X, which we could 44 for 64 bit (x86_64) Linux or Mac OS X. Other platforms were compilation from
22 use once the extensions to allow that are in the stable Galaxy releases. 45 source would be required (e.g. 32 bit Linux and Mac) are not supported by this
46 automated installation script.
23 47
24 http://chevreux.org/projects_mira.html 48 http://chevreux.org/projects_mira.html
25 http://sourceforge.net/projects/mira-assembler/ 49 http://sourceforge.net/projects/mira-assembler/
26 </readme> 50 </readme>
27 </package> 51 </package>