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comparison tools/mira4_0/README.rst @ 29:3bdcee1798d0 draft

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planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit c8f27e9d77b9b0827bc7660e599cd19a546d9c9f
author peterjc
date Fri, 02 Oct 2015 06:08:30 -0400
parents a758156fc4cd
children b506e3b779fa
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28:37152a480948 29:3bdcee1798d0
19 19
20 Automated Installation 20 Automated Installation
21 ====================== 21 ======================
22 22
23 This should be straightforward. Via the Tool Shed, Galaxy should automatically 23 This should be straightforward. Via the Tool Shed, Galaxy should automatically
24 install the ``mira`` datatype, samtools, and download and install the precompiled 24 install the 'mira' datatype, samtools, and download and install the precompiled
25 binary for MIRA v4.0.2 for the Galaxy wrapper, and run any tests. 25 binary for MIRA v4.0.2 for the Galaxy wrapper, and run any tests.
26 26
27 For MIRA 4, the Galaxy wrapper has been split in two, allowing separate 27 For MIRA 4, the Galaxy wrapper has been split in two, allowing separate
28 cluster settings for de novo usage (high RAM) and mapping (lower RAM). 28 cluster settings for de novo usage (high RAM) and mapping (lower RAM).
29 Consult the Galaxy adminstration documentation for your cluster setup. 29 Consult the Galaxy adminstration documentation for your cluster setup.
104 - Use the ``format_source=...`` tag in the MIRA bait wrapper. 104 - Use the ``format_source=...`` tag in the MIRA bait wrapper.
105 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). 105 - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
106 - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package. 106 - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package.
107 v0.0.8 - Renamed folder now have a MIRA 4.9.x wrapper (internal change only). 107 v0.0.8 - Renamed folder now have a MIRA 4.9.x wrapper (internal change only).
108 v0.0.9 - Additional unit tests now covering ``miraconvert``. 108 v0.0.9 - Additional unit tests now covering ``miraconvert``.
109 - Was missing ``mirabait`` wrapper since move to using Planemo.
109 ======= ====================================================================== 110 ======= ======================================================================
110 111
111 112
112 Developers 113 Developers
113 ========== 114 ==========