Mercurial > repos > peterjc > mira4_assembler

comparison tools/mira4/README.rst @ 18:381aa262c8cb draft

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Uploaded v0.0.2 preview 10, override /tmp via environment variable
author peterjc
date Tue, 25 Mar 2014 07:37:50 -0400
parents 5bbaa930d7fa
children 8487d70e82aa
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17:5bbaa930d7fa 18:381aa262c8cb
84 Version Changes 84 Version Changes
85 ------- ---------------------------------------------------------------------- 85 ------- ----------------------------------------------------------------------
86 v0.0.1 - Initial version (prototype for MIRA 4.0 RC4, based on wrapper for v3.4) 86 v0.0.1 - Initial version (prototype for MIRA 4.0 RC4, based on wrapper for v3.4)
87 v0.0.2 - Include BAM output (using ``miraconvert`` and ``samtools``). 87 v0.0.2 - Include BAM output (using ``miraconvert`` and ``samtools``).
88 - Updated to target MIRA 4.0 88 - Updated to target MIRA 4.0
89 - Simplified XML to apply input format to output data.
90 - Sets temporary folder at run time to respect environment variables
91 (``$TMPDIR``, ``$TEMP``, or ``$TMP`` in that order). This was
92 previously hard coded as ``/tmp``.
89 ======= ====================================================================== 93 ======= ======================================================================
90 94
91 95
92 Developers 96 Developers
93 ========== 97 ==========