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comparison tools/mira4/README.rst @ 11:02350bef2e99 draft

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Uploaded v0.0.2 preview 3, correction regression in URL
author peterjc
date Tue, 10 Dec 2013 06:29:13 -0500
parents 302d13490b23
children a6a56440567c
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10:79759fdec6cb 11:02350bef2e99
54 this to ``tools_conf.xml.sample`` in order to run the tests:: 54 this to ``tools_conf.xml.sample`` in order to run the tests::
55 55
56 <tool file="mira4/mira4_de_novo.xml" /> 56 <tool file="mira4/mira4_de_novo.xml" />
57 <tool file="mira4/mira4_mapping.xml" /> 57 <tool file="mira4/mira4_mapping.xml" />
58 58
59 You will also need to install MIRA, we used version 4.0 RC4, and define the 59 You will also need to install MIRA, we used version 4.0 RC5, and define the
60 environment variable ``$MIRA4`` pointing at the folder containing the binaries. 60 environment variable ``$MIRA4`` pointing at the folder containing the binaries.
61 See: 61 See:
62 62
63 * http://chevreux.org/projects_mira.html 63 * http://chevreux.org/projects_mira.html
64 * http://sourceforge.net/projects/mira-assembler/ 64 * http://sourceforge.net/projects/mira-assembler/
83 ======= ====================================================================== 83 ======= ======================================================================
84 Version Changes 84 Version Changes
85 ------- ---------------------------------------------------------------------- 85 ------- ----------------------------------------------------------------------
86 v0.0.1 - Initial version (prototype for MIRA 4.0 RC4, based on wrapper for v3.4) 86 v0.0.1 - Initial version (prototype for MIRA 4.0 RC4, based on wrapper for v3.4)
87 v0.0.2 - Include BAM output (using ``miraconvert`` and ``samtools``). 87 v0.0.2 - Include BAM output (using ``miraconvert`` and ``samtools``).
88 - Updated to target MIRA 4.0 RC5
88 ======= ====================================================================== 89 ======= ======================================================================
89 90
90 91
91 Developers 92 Developers
92 ========== 93 ==========