Mercurial > repos > peterjc > effectivet3

comparison tools/effectiveT3/effectiveT3.xml @ 18:999776f0aee4 draft

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v0.0.16, adding new model TTSS-STD-2.0.2.jar
author peterjc
date Mon, 21 Sep 2015 05:45:51 -0400
parents bc93121586ba
children f5e52dd0935f
comparison
equal deleted inserted replaced
17:c9ef96985153 18:999776f0aee4
1 <tool id="effectiveT3" name="Effective T3" version="0.0.15"> 1 <tool id="effectiveT3" name="Effective T3" version="0.0.16">
2 <description>Find bacterial effectors in protein sequences</description> 2 <description>Find bacterial effectors in protein sequences</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0.1">effectiveT3</requirement> 4 <requirement type="package" version="1.0.1">effectiveT3</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
46 <test> 46 <test>
47 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" /> 47 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" />
48 <param name="module" value="animal" /> 48 <param name="module" value="animal" />
49 <param name="type" value="selective" /> 49 <param name="type" value="selective" />
50 <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" lines_diff="2"/> 50 <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" lines_diff="2"/>
51 </test>
52 <test>
53 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" />
54 <param name="module" value="std_2_0_2" />
55 <param name="type" value="cutoff" />
56 <param name="cutoff" value="0.8" />
57 <output name="tabular_file" file="four_human_proteins.effectiveT3_std2.tabular" ftype="tabular" />
51 </test> 58 </test>
52 <test> 59 <test>
53 <param name="fasta_file" value="empty.fasta" ftype="fasta" /> 60 <param name="fasta_file" value="empty.fasta" ftype="fasta" />
54 <param name="module" value="plant" /> 61 <param name="module" value="plant" />
55 <param name="type" value="sensitive" /> 62 <param name="type" value="sensitive" />