Mercurial > repos > peterjc > effectivet3

comparison tools/effectiveT3/README.rst @ 18:999776f0aee4 draft

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v0.0.16, adding new model TTSS-STD-2.0.2.jar
author peterjc
date Mon, 21 Sep 2015 05:45:51 -0400
parents c9ef96985153
children e870c7bf6c5a
comparison
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17:c9ef96985153 18:999776f0aee4
87 v0.0.13 - Relax unit test to allow for small floating point score difference. 87 v0.0.13 - Relax unit test to allow for small floating point score difference.
88 - Tool definition now embeds citation information. 88 - Tool definition now embeds citation information.
89 v0.0.14 - Fixed error handling in ``effectiveT3.py``. 89 v0.0.14 - Fixed error handling in ``effectiveT3.py``.
90 v0.0.15 - Reorder XML elements (internal change only). 90 v0.0.15 - Reorder XML elements (internal change only).
91 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). 91 - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
92 v0.0.16 - Updated URLs to download the tool and models.
93 - Includes new standard classification model v2.0.2 (Sep 2015)
94 as the default entry in ``tool-data/effectiveT3.loc``
95 - Catch java exception, e.g. if Java too old for ``TTSS-STD-2.0.1.jar``
92 ======= ====================================================================== 96 ======= ======================================================================
93 97
94 98
95 Developers 99 Developers
96 ========== 100 ==========
103 107
104 For pushing a release to the test or main "Galaxy Tool Shed", use the following 108 For pushing a release to the test or main "Galaxy Tool Shed", use the following
105 Planemo commands (which requires you have set your Tool Shed access details in 109 Planemo commands (which requires you have set your Tool Shed access details in
106 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: 110 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
107 111
108 $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/ 112 $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/
109 ... 113 ...
110 114
111 or:: 115 or::
112 116
113 $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/ 117 $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/
114 ... 118 ...
115 119
116 To just build and check the tar ball, use:: 120 To just build and check the tar ball, use::
117 121
118 $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/effectiveT3/ 122 $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/effectiveT3/