Mercurial > repos > peterjc > effectivet3

comparison tool-data/effectiveT3.loc.sample @ 1:7479dbb285b5 draft

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Uploaded v0.0.10, adds unit test
author peterjc
date Wed, 17 Apr 2013 05:25:25 -0400
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children 999776f0aee4
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0:096088373590 1:7479dbb285b5
1 # This is a three column tab separated file to define the modules (models)
2 # for the Effective T3 prediction tool.
3 #
4 # Column 1 - Module ID, string that Galaxy will save in its database
5 # Column 2 - Human readable name, Galaxy will show this in the UI
6 # Column 3 - Filename, Galaxy will use this when calling the tool
7 #
8 #NOTE: In EffectiveT3 v1.0.1, the modules are given as their filename
9 #(with the JAR extension) but without any path. They are expected to
10 #be located in a subdirectory called module under the working directory.
11 #For the galaxy wrapper, we assume this means under the folder where the
12 #main JAR file is, TTSS_GUI-1.0.1.jar
13 #
14 #e.g.
15 #
16 # /opt/EffectiveT3/TTSS_GUI-1.0.1.jar
17 # /opt/EffectiveT3/module/TTSS_STD-1.0.1.jar
18 # /opt/EffectiveT3/module/TTSS_ANIMAL-1.0.1.jar
19 # /opt/EffectiveT3/module/TTSS_PLANT-1.0.1.jar
20 #
21 #See files ../tools/protein_analysis/effectiveT3.* for more details,
22 #and http://effectors.org
23 #
24 standard Type III Effector prediction with standard set TTSS_STD-1.0.1.jar
25 animal Type III Effector prediction with animal set TTSS_ANIMAL-1.0.1.jar
26 plant Type III Effector prediction with plant set TTSS_PLANT-1.0.1.jar