Mercurial > repos > peterjc > effectivet3

comparison tools/effectiveT3/effectiveT3.xml @ 15:17fbf8b8a554 draft

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Uploaded v0.0.13, embed citation, relax test for floating point differences
author peterjc
date Tue, 25 Nov 2014 08:25:55 -0500
parents 169f8af5dd80
children bc93121586ba
comparison
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14:1e681e19e35c 15:17fbf8b8a554
1 <tool id="effectiveT3" name="Effective T3" version="0.0.12"> 1 <tool id="effectiveT3" name="Effective T3" version="0.0.13">
2 <description>Find bacterial effectors in protein sequences</description> 2 <description>Find bacterial effectors in protein sequences</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0.1">effectiveT3</requirement> 4 <requirement type="package" version="1.0.1">effectiveT3</requirement>
5 </requirements> 5 </requirements>
6 <version_command interpreter="python">effectiveT3.py --version</version_command> 6 <version_command interpreter="python">effectiveT3.py --version</version_command>
45 <tests> 45 <tests>
46 <test> 46 <test>
47 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" /> 47 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" />
48 <param name="module" value="animal" /> 48 <param name="module" value="animal" />
49 <param name="type" value="selective" /> 49 <param name="type" value="selective" />
50 <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" /> 50 <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" lines_diff="2"/>
51 </test> 51 </test>
52 <test> 52 <test>
53 <param name="fasta_file" value="empty.fasta" ftype="fasta" /> 53 <param name="fasta_file" value="empty.fasta" ftype="fasta" />
54 <param name="module" value="plant" /> 54 <param name="module" value="plant" />
55 <param name="type" value="sensistive" /> 55 <param name="type" value="sensitive" />
56 <output name="tabular_file" file="empty_effectiveT3.tabular" ftype="tabular" /> 56 <output name="tabular_file" file="empty_effectiveT3.tabular" ftype="tabular" />
57 </test> 57 </test>
58 </tests> 58 </tests>
59 <help> 59 <help>
60 60
97 See also http://effectors.org/ 97 See also http://effectors.org/
98 98
99 This wrapper is available to install into other Galaxy Instances via the Galaxy 99 This wrapper is available to install into other Galaxy Instances via the Galaxy
100 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/effectivet3 100 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/effectivet3
101 </help> 101 </help>
102 <citations>
103 <citation type="doi">10.7717/peerj.167</citation>
104 <citation type="doi">10.1093/nar/gkq1154</citation>
105 <citation type="doi">10.1371/journal.ppat.1000376</citation>
106 </citations>
102 </tool> 107 </tool>