Mercurial > repos > peterjc > effectivet3

comparison tools/effectiveT3/effectiveT3.py @ 30:007e86eff414 draft

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 commit 7ea917a606c9226a0c902504f963577c8986d4a5-dirty
author peterjc
date Mon, 22 May 2017 06:33:59 -0400
parents 35c358aa7801
children 3ef6c246ccac
comparison
equal deleted inserted replaced
29:35c358aa7801 30:007e86eff414
102 % (os.path.join(effective_t3_dir, "module"), 102 % (os.path.join(effective_t3_dir, "module"),
103 ", ".join(repr(p) for p in os.listdir(os.path.join(effective_t3_dir, "module"))))) 103 ", ".join(repr(p) for p in os.listdir(os.path.join(effective_t3_dir, "module")))))
104 sys.stderr.write("Main JAR was found: %r\n" % effective_t3_jar) 104 sys.stderr.write("Main JAR was found: %r\n" % effective_t3_jar)
105 sys.exit("Effective T3 model JAR file not found: %r" % effective_t3_model) 105 sys.exit("Effective T3 model JAR file not found: %r" % effective_t3_model)
106 106
107 # We will have write access whereever the output should be, 107 # We will have write access wherever the output should be,
108 temp_file = os.path.abspath(tabular_file + ".tmp") 108 temp_file = os.path.abspath(tabular_file + ".tmp")
109 109
110 # Use absolute paths since will change current directory... 110 # Use absolute paths since will change current directory...
111 tabular_file = os.path.abspath(tabular_file) 111 tabular_file = os.path.abspath(tabular_file)
112 fasta_file = os.path.abspath(fasta_file) 112 fasta_file = os.path.abspath(fasta_file)