Mercurial > repos > peterjc > effectivet3

annotate tool-data/effectiveT3.loc.sample @ 35:e2711662802b draft default tip

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 commit d67596914a7bbe183851437eaafe8c7305877e5a-dirty
author peterjc
date Fri, 22 Feb 2019 10:13:22 -0500
parents 999776f0aee4
children
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1 # This is a three column tab separated file to define the modules (models)
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2 # for the Effective T3 prediction tool.
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3 #
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4 # Column 1 - Module ID, string that Galaxy will save in its database
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5 # Column 2 - Human readable name, Galaxy will show this in the UI
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6 # Column 3 - Filename, Galaxy will use this when calling the tool
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7 #
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8 #NOTE: In EffectiveT3 v1.0.1, the modules are given as their filename
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9 #(with the JAR extension) but without any path. They are expected to
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10 #be located in a subdirectory called module under the working directory.
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11 #For the galaxy wrapper, we assume this means under the folder where the
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12 #main JAR file is, TTSS_GUI-1.0.1.jar
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13 #
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14 #e.g.
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15 #
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16 # /opt/EffectiveT3/TTSS_GUI-1.0.1.jar
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17 # /opt/EffectiveT3/module/TTSS_STD-2.0.2.jar
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18 # /opt/EffectiveT3/module/TTSS_STD-1.0.1.jar
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19 # /opt/EffectiveT3/module/TTSS_ANIMAL-1.0.1.jar
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20 # /opt/EffectiveT3/module/TTSS_PLANT-1.0.1.jar
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21 #
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22 #See files ../tools/protein_analysis/effectiveT3.* for more details,
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23 #and http://effectors.org
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24 #
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25 std_2_0_2 Type III Effector prediction with standard set (v2.0.2, Sep 2015) TTSS_STD-2.0.2.jar
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26 standard Type III Effector prediction with standard set (v1.0.1, Aug 2009) TTSS_STD-1.0.1.jar
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27 animal Type III Effector prediction with human/animal-associated set (v1.0.1, Aug 2009) TTSS_ANIMAL-1.0.1.jar
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28 plant Type III Effector prediction with plant-associated set (v1.0.1, Aug 2009) TTSS_PLANT-1.0.1.jar