# HG changeset patch # User peterjc # Date 1597319812 0 # Node ID 4f71065fcf0fded6f03e0d75a242d5c444154c90 # Parent 1446811c3fe899a817a9238846f4bee38698566c "planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/count_roi_variants commit ee36da91aca79a79869e93cc3baa20cb7924669b-dirty" diff -r 1446811c3fe8 -r 4f71065fcf0f tools/count_roi_variants/count_roi_variants.py --- a/tools/count_roi_variants/count_roi_variants.py Fri Feb 22 10:11:49 2019 -0500 +++ b/tools/count_roi_variants/count_roi_variants.py Thu Aug 13 11:56:52 2020 +0000 @@ -288,7 +288,7 @@ # Could recreate the region string (with no commas in start/end)? # region = "%s:%i-%i" % (ref, start, end) - tally = dict() + tally = {} # Call samtools view, don't need header so no -h added. # Only want mapped reads, thus flag filter -F 4.