# HG changeset patch
# User peterjc
# Date 1494511508 14400
# Node ID 4200518b0febc43d82643c561b94ea28a5899c85
# Parent  7f6a56260be6ec9bc489050f3a9dd07da1d1d85c
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/count_roi_variants commit 7496128ee9ef800fe780e545d2157da8a4f89d35-dirty

diff -r 7f6a56260be6 -r 4200518b0feb tools/count_roi_variants/count_roi_variants.py
--- a/tools/count_roi_variants/count_roi_variants.py	Wed May 10 12:38:55 2017 -0400
+++ b/tools/count_roi_variants/count_roi_variants.py	Thu May 11 10:05:08 2017 -0400
@@ -196,6 +196,10 @@
 
 
 def count_region():
+    """Count reads mapped to the region.
+
+    Calls samtools view and parses the output.
+    """
     # Could recreate the region string (with no commas in start/end)?
     # region = "%s:%i-%i" % (ref, start, end)
 
@@ -239,7 +243,7 @@
 
 
 def record_counts():
-
+    """Record counts to tabular file."""
     tally = count_region()
     total = sum(tally.values())