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annotate test-data/rhodopsin_proteins.fasta @ 42:2bca27f8abb2 draft default tip

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v0.3.0 - Updated to BLAST+ 2.9.0 via conda; removed legacy tool packages.
author peterjc
date Wed, 07 Dec 2022 09:58:43 +0000
parents a68f4e5789d7
children
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1
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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1 >gi|57163783|ref|NP_001009242.1| rhodopsin [Felis catus]
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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2 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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3 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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4 KPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVV
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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5 HFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQG
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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6 SNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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7
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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8 >gi|3024260|sp|P56514.1|OPSD_BUFBU RecName: Full=Rhodopsin
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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9 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRT
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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10 PLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVC
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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11 KPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVV
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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12 HFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQG
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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13 SEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTEASSVSSSQ
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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14 VSPA
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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15
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
parents:
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16 >gi|283855846|gb|ADB45242.1| rhodopsin [Cynopterus brachyotis]
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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17 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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18 VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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19 NHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIF
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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20 FCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTL
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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21 PAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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22
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
parents:
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23 >gi|283855823|gb|ADB45229.1| rhodopsin [Myotis pilosus]
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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24 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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25 VANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
parents:
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26 NHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIF
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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27 FCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTI
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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28 PAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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29
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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30 >gi|223523|prf||0811197A rhodopsin [Bos taurus]
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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31 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRT
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
parents:
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32 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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33 KPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYTPHEETNNESFVIYMFVVH
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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34 FIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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35 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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36
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
parents:
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37 >gi|12583665|dbj|BAB21486.1| fresh water form rod opsin [Conger myriaster]
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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38 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRT
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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39 PLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVC
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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40 KPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTC
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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41 HFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQG
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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42 STFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTEASSVSSSS
a68f4e5789d7 Uploaded v0.1.0a, including a blastp test.
peterjc
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43 VSPA