Mercurial > repos > peterjc > blast2go

diff tools/ncbi_blast_plus/blast2go.py @ 2:5cb24d07c316 draft

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Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
author peterjc
date Fri, 22 Feb 2013 09:13:27 -0500
parents 7b53cc52e7ed
children
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--- a/tools/ncbi_blast_plus/blast2go.py	Tue Jun 07 15:51:46 2011 -0400
+++ b/tools/ncbi_blast_plus/blast2go.py	Fri Feb 22 09:13:27 2013 -0500
@@ -6,9 +6,9 @@
  * Blast2GO properties filename (settings file)
  * Output tabular filename
 
-Sadly b2g4pipe v2.3.5 cannot cope with current style large BLAST XML
-files (e.g. from BLAST 2.2.25+), so we have to reformat these to
-avoid it crashing with a Java heap space OutOfMemoryError.
+Sadly b2g4pipe (at least v2.3.5 to v2.5.0) cannot cope with current
+style large BLAST XML files (e.g. from BLAST 2.2.25+), so we reformat
+these to avoid it crashing with a Java heap space OutOfMemoryError.
 
 As part of this reformatting, we check for BLASTP or BLASTX output
 (otherwise raise an error), and print the query count.