Mercurial > repos > peterjc > blast2go

annotate tool-data/blast2go.loc.sample @ 4:d2b527ddb42d draft

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Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
author peterjc
date Fri, 22 Feb 2013 09:15:24 -0500
parents 5cb24d07c316
children 2921c0f29c85
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5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
1 # This is a three column tab separated file to define the properties
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
2 # file (settings) to be offered for Blast2GO for Pipelines (b2g4pipe).
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
3 #
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
4 # Column 1 - ID, string that Galaxy will save in its database
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
5 # Column 2 - Human readable name, Galaxy will show this in the UI
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
6 # Column 3 - Filename, Galaxy will use this when calling the tool
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
7 #
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
8 # Probably the most important setting in the properties file is the
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
9 # Blast2GO database to use. Currently b2g4pipe v2.3.5 ships with an
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
10 # old configuration so consult http://blast2go.org for the latest
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
11 # public database they host in Spain. We also strongly recommend
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
12 # configuring a local Blast2GO database.
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
13 #
4
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
14 # The property filenames can be fullied qualified paths like
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
15 # /opt/b2g4pipe/Spain_2012_August.properties or provided they are
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
16 # in the same folder as the Blast2GO JAR file, just the filename
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
17 # like Spain_2012_August.properties instead. This is intended to
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
18 # make migrating between versions of Blast2GO easier (as the
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
19 # property files change between versions), and simpler overall.
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
20 #
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
21 Local_2011_May Local database (May 2011) Local_2011_May.properties
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
22 Spain_2010_May Database in Spain (May 2010) Spain_2010_May.properties
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
23 Spain_2011_June Database in Spain (June 2011) Spain_2011_June.properties
d2b527ddb42d Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 2
diff changeset
24 Spain_2012_August Database in Spain (August 2012) Spain_2012_August.properties