Mercurial > repos > p.lucas > varscan_readcount

changeset 12:0179feb477d7 draft default tip

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Uploaded
author p.lucas
date Thu, 10 Feb 2022 12:46:44 +0000
parents cad99097cdc2
children
files varscan_readcount.xml
diffstat 1 files changed, 5 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/varscan_readcount.xml	Thu Feb 10 12:39:08 2022 +0000
+++ b/varscan_readcount.xml	Thu Feb 10 12:46:44 2022 +0000
@@ -16,9 +16,14 @@
   </outputs>
   <help>
     USAGE: java -jar VarScan.jar readcounts pileup_file OPTIONS
+
     OPTIONS:
+
       --output-file   Output file to contain the readcounts
+
       --min-coverage  Minimum read depth at a position to make a call (default: 1)
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       --min-base-qual Minimum base quality at a position to count a read (default: 20)
+
   </help>
 </tool>