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view varscan_readcount.xml @ 7:2709a3c1548c draft

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Uploaded minimum xml
author p.lucas
date Thu, 10 Feb 2022 12:34:34 +0000
parents 9001935fe8c0
children 939dcf9b0374
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<tool id="varscan" name="VarScan Readcount" version="2.0">
  <description>To use varscan readcount tool</description>
  <requirements>
    <requirement type="package" version="2.4.4">varscan</requirement>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
    varscan readcounts '${input}' --output-file '${output}'
  ]]></command>
  <inputs>
    <param name="input" format="pileup" type="data" label="Pileup dataset"/>
  </inputs>
  <outputs>
    <data name="output" format="vcf"/>
  </outputs>
</tool>