# HG changeset patch
# User p.lucas
# Date 1695886935 0
# Node ID ad27c2b4e2c371a6c338e8bc817f9bf774319e0d
# Parent  f83dad3524f90c6f76381e40e5162ca50a1b7c4d
Update: add txt format for input file

diff -r f83dad3524f9 -r ad27c2b4e2c3 TAXID_genusexpand_taxid2acc_offline_searchinhostcompletegenomedb.xml
--- a/TAXID_genusexpand_taxid2acc_offline_searchinhostcompletegenomedb.xml	Thu Sep 21 15:23:24 2023 +0000
+++ b/TAXID_genusexpand_taxid2acc_offline_searchinhostcompletegenomedb.xml	Thu Sep 28 07:42:15 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="TAXID_genusexpand_taxid2acc_offline_searchinhostcompletegenomedb" name="Used after Get acc number for complete genome after MEGABLAST_TAB_select_acc_under_taxids" version="1.0">
+<tool id="TAXID_genusexpand_taxid2acc_offline_searchinhostcompletegenomedb" name="Used after Get acc number for complete genome after MEGABLAST_TAB_select_acc_under_taxids" version="1.1">
   <description>
     From a file of taxid and accession numbers (tsv), deduce species taxids, get ref genome acc nr list (all chr).
     (it will allow to have complete genomes when aligning with host to remove host reads)
@@ -15,8 +15,8 @@
     python '$__tool_directory__/TAXID_genusexpand_taxid2acc_offline_searchinhostcompletegenomedb.py' -i ${input} -d ${taxid_host_db} -o ${output}
   ]]></command>
   <inputs>
-    <param name="input" format="tsv" type="data" label="Select tsv file with list of taxid and accession number." help="tsv output of MEGABLAST_TAB_select_acc_under_taxids.py (One taxid acc nbr per line)"/>
-    <param name="taxid_host_db" format="tsv" type="data" label="Select tsv file for HOSTS." help="taxid acc_number list in tsv (tabular separated at each line) for HOSTS"/>
+    <param name="input" format="tsv,txt" type="data" label="Select tsv file with list of taxid and accession number." help="tsv output of MEGABLAST_TAB_select_acc_under_taxids.py (One taxid acc nbr per line)"/>
+    <param name="taxid_host_db" format="tsv,txt" type="data" label="Select tsv file for HOSTS." help="taxid acc_number list in tsv (tabular separated at each line) for HOSTS"/>
   </inputs> 
   <outputs>
     <data name="output" format="txt" label="COMPLETE GENOME FROM ${tool.name} on ${on_string}"/>