Mercurial > repos > p.lucas > taxid_genusexpand_taxid2acc

comparison TAXID_genusexpand_taxid2acc.py @ 16:992af66092f7 draft default tip

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Fix error in script
author p.lucas
date Thu, 28 Sep 2023 15:28:08 +0000
parents 932ba9e04f3a
children
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15:932ba9e04f3a 16:992af66092f7
494 # MAIN 494 # MAIN
495 # -------------------------------------------------------------------------- 495 # --------------------------------------------------------------------------
496 ##### MAIN 496 ##### MAIN
497 def __main__(): 497 def __main__():
498 # load taxid_acc file 498 # load taxid_acc file
499 load_taxids(taxid_acc_tabular_f) 499 load_taxids(taxid_acc_in_f)
500 #load_taxids(taxid_acc_tabular_f)
500 # check in ncbi taxonomy which acc number are in and out of given taxid 501 # check in ncbi taxonomy which acc number are in and out of given taxid
501 add_host_chr_taxids_accnr_from_ori_list(taxidlist, 502 add_host_chr_taxids_accnr_from_ori_list(taxidlist,
502 accnrlist, 503 accnrlist,
503 acc_out_f) 504 acc_out_f)
504 # -------------------------------------------------------------------------- 505 # --------------------------------------------------------------------------