Mercurial > repos > p.lucas > taxid_genusexpand_taxid2acc

comparison TAXID_genusexpand_taxid2acc.py @ 8:8c9418230a5a draft

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Uploaded 13 03 23 Fix bug on variable name line 465
author p.lucas
date Mon, 13 Mar 2023 15:53:02 +0000
parents 9238e54d6532
children 7e75c71e3c8e
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7:9238e54d6532 8:8c9418230a5a
460 # MAIN 460 # MAIN
461 # -------------------------------------------------------------------------- 461 # --------------------------------------------------------------------------
462 ##### MAIN 462 ##### MAIN
463 def __main__(): 463 def __main__():
464 # load taxid_acc file 464 # load taxid_acc file
465 load_taxids(taxid_acc_tabular_f) 465 load_taxids(taxid_acc_in_f)
466 # check in ncbi taxonomy which acc number are in and out of given taxid 466 # check in ncbi taxonomy which acc number are in and out of given taxid
467 add_host_chr_taxids_accnr_from_ori_list(taxidlist, 467 add_host_chr_taxids_accnr_from_ori_list(taxidlist,
468 accnrlist, 468 accnrlist,
469 acc_out_f) 469 acc_out_f)
470 # -------------------------------------------------------------------------- 470 # --------------------------------------------------------------------------