# HG changeset patch
# User p.lucas
# Date 1649314867 0
# Node ID 1ba09e41181d2014cab8d91348c9cd8c7909a05d
# Parent  e94c6265e7e19d6c60e3f0416baf97596ec5dd25
MAJ way to access to resfinder

diff -r e94c6265e7e1 -r 1ba09e41181d Resfinder_wrapper.xml
--- a/Resfinder_wrapper.xml	Wed Apr 06 16:11:02 2022 +0000
+++ b/Resfinder_wrapper.xml	Thu Apr 07 07:01:07 2022 +0000
@@ -120,7 +120,7 @@
     <requirement type="package" version="1.2.11">zlib</requirement>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
-    ln -s '${input}' ${_input_file} && python3 $__tool_directory__/resfinder/run_resfinder.py -s "$s" -l "$l" -t "$y" --acquired --point -ifa $_input_file -db_res $__tool_directory__/resfinder/db_resfinder/ -db_point $__tool_directory__/resfinder/db_pointfinder/ -o output && mv ./output/ResFinder_Resistance_gene_seq.fsa $resistance_genes
+    ln -s '${input}' ${_input_file} && python3 /home/galaxy/resfinder/run_resfinder.py -s "$s" -l "$l" -t "$y" --acquired --point -ifa $_input_file -db_res /home/galaxy/resfinder/db_resfinder/ -db_point /home/galaxy/resfinder/db_pointfinder/ -o output && mv ./output/ResFinder_Resistance_gene_seq.fsa $resistance_genes
   ]]></command>
   <inputs>
     <param format="fasta" name="input" type="data" label="FASTA file : "/>