# HG changeset patch
# User p.lucas
# Date 1556791281 14400
# Node ID d2b7013db3514c12238efc915c3cd599c151285a
# Parent  a800e41674f1e5bc1db4c2787023b0cdf28f43b3
Uploaded

diff -r a800e41674f1 -r d2b7013db351 mafft.xml
--- a/mafft.xml	Thu May 02 05:52:08 2019 -0400
+++ b/mafft.xml	Thu May 02 06:01:21 2019 -0400
@@ -22,7 +22,12 @@
         <param name="existingalignment" type="data" format="fasta" label="Alignment already done" help="Multi-alignment in FASTA format."/>
     </inputs>
     <outputs>
-        <data format="fasta" name="outputAlignment" label="${tool.name} on ${on_string}"/>
+        <data format="fasta" name="outputAlignment" label="${tool.name} on ${on_string}">
+            <change_format>
+                <when input="outputFormat" value="--clustalout" format="clustal"/>
+                <when input="outputFormat" value="--phylipout" format="phylip"/>
+            </change_format>
+        </data>
     </outputs>
     <help>
     <![CDATA[