Mercurial > repos > p.lucas > mafft_add_sequence

comparison mafft.xml @ 6:07c595dae342 draft

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author p.lucas
date Thu, 02 May 2019 07:13:11 -0400
parents 2739c99b076e
children 836c7a8e563f
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5:2739c99b076e 6:07c595dae342
12 mafft --version 12 mafft --version
13 ]]> 13 ]]>
14 </version_command> 14 </version_command>
15 <command> 15 <command>
16 <![CDATA[ 16 <![CDATA[
17 mafft --thread \${GALAXY_SLOTS:-1} --add $seqtoadd --reorder $existingalignment $outputFormat > $outputAlignment 17 mafft --thread \${GALAXY_SLOTS:-1} --add $seqtoadd --reorder $existingalignment $outputFormat > $outputAlignment;
18 ]]> 18 ]]>
19 </command> 19 </command>
20 <inputs> 20 <inputs>
21 <param name="seqtoadd" type="data" format="fasta" label="Sequences to add" help="Sequences to add in FASTA format."/> 21 <param name="seqtoadd" type="data" format="fasta" label="Sequences to add" help="Sequences to add in FASTA format."/>
22 <param name="existingalignment" type="data" format="fasta" label="Alignment already done" help="Multi-alignment in FASTA format."/> 22 <param name="existingalignment" type="data" format="fasta" label="Alignment already done" help="Multi-alignment in FASTA format."/>