Mercurial > repos > p.lucas > extract_fasta_subsequence

comparison exseq_multi.py @ 6:612269711364 draft default tip

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author p.lucas
date Wed, 26 Sep 2018 08:48:08 -0400
parents 746e286edff0
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5:76a5d10c40f0 6:612269711364
44 44
45 # Ouputs : 45 # Ouputs :
46 with open(infile, "rU") as inf: 46 with open(infile, "rU") as inf:
47 # Input treatment : 47 # Input treatment :
48 for rec in SeqIO.parse(inf, "fasta"): 48 for rec in SeqIO.parse(inf, "fasta"):
49 outputfile.write(rec.id+'\n') 49 outputfile.write('>'+rec.id+'\n')
50 outputfile.write(str(rec.seq[int(spos):int(epos)])+'\n') 50 outputfile.write(str(rec.seq[int(spos):int(epos)])+'\n')
51 51
52 # Fermeture des fichiers. 52 # Fermeture des fichiers.
53 outputfile.close() 53 outputfile.close()
54 54