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separate into 2 dependencies
author nilesh
date Mon, 15 Jul 2013 13:13:22 -0500
parents 0f95d40cb684
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="zlib" version="1.2.8">
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4 <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="sickle" version="1.21.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="set_environment_for_install">
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10 <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" toolshed="http://testtoolshed.g2.bx.psu.edu">
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11 <package name="zlib" version="1.2.8" />
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12 </repository>
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13 </action>
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14 <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action>
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15 <action type="shell_command">cd ./sickle &amp;&amp; make LIBS="-L$ZLIB_PATH -lz"</action>
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16 <action type="move_file">
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17 <source>sickle/sickle</source>
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18 <destination>$INSTALL_DIR/bin</destination>
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19 </action>
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20 <action type="set_environment">
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21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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22 </action>
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23 </actions>
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24 </install>
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25 <readme>
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26 Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo.
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27 </readme>
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28 </package>
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29 </tool_dependency>