Mercurial > repos > nilesh > sickle_dev
view tool_dependencies.xml @ 7:7e599ffef625
used env[]
| author | nilesh |
|---|---|
| date | Mon, 15 Jul 2013 11:26:46 -0500 |
| parents | 2f974f257839 |
| children | 7ebde7d1281c |
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<?xml version="1.0"?> <tool_dependency> <package name="zlib" version="1.2.8"> <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="sickle" version="1.21.0"> <install version="1.0"> <actions> <action type="set_environment_for_install"> <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="zlib" version="1.2.8" /> </repository> </action> <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action> <action type="shell_command">cd ./sickle && make LIBS="-L$ENV[ZLIB_PATH] -lz"</action> <action type="move_file"> <source>sickle</source> <destination>.</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo. </readme> </package> </tool_dependency>
