Mercurial > repos > nilesh > sickle_dev
comparison tool_dependencies.xml @ 1:db0c767dbe09
first commit
| author | nilesh |
|---|---|
| date | Mon, 15 Jul 2013 10:11:13 -0500 |
| parents | |
| children | b04d24abd573 |
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| 0:12f0ce236f6e | 1:db0c767dbe09 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="sickle" version="1.21.0"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action> | |
| 7 <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action> | |
| 8 <action type="shell_command">make</action> | |
| 9 <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action> | |
| 10 <action type="set_environment"> | |
| 11 <environment_variable name="ZLIB_PATH" action="set_to">$INSTALL_DIR/zlib/lib</environment_variable> | |
| 12 </action> | |
| 13 <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action> | |
| 14 <action type="shell_command">make LIBS="-L$INSTALL_DIR/zlib/lib -lz"</action> | |
| 15 <action type="move_file"> | |
| 16 <source>sickle</source> | |
| 17 <destination>$INSTALL_DIR/bin</destination> | |
| 18 </action> | |
| 19 <action type="set_environment"> | |
| 20 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 21 </action> | |
| 22 </actions> | |
| 23 </install> | |
| 24 <readme> | |
| 25 Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo. | |
| 26 </readme> | |
| 27 </package> | |
| 28 </tool_dependency> |