comparison tool_dependencies.xml @ 2:b04d24abd573

separated into two dependencies
author nilesh
date Mon, 15 Jul 2013 10:47:42 -0500
parents db0c767dbe09
children 13837e38aad2
comparison
equal deleted inserted replaced
1:db0c767dbe09 2:b04d24abd573
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="sickle" version="1.21.0"> 3 <package name="zlib" version="1.2.8">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action> 6 <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action>
7 <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action> 7 <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action>
8 <action type="shell_command">make</action> 8 <action type="shell_command">make</action>
9 <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action> 9 <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action>
10 <action type="set_environment"> 10 <action type="set_environment">
11 <environment_variable name="ZLIB_PATH" action="set_to">$INSTALL_DIR/zlib/lib</environment_variable> 11 <environment_variable name="ZLIB_PATH" action="set_to">$INSTALL_DIR/zlib/lib</environment_variable>
12 </action> 12 </action>
13 </actions>
14 </install>
15 <readme>
16 Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo.
17 </readme>
18 </package>
19 <package name="sickle" version="1.21.0">
20 <install version="1.0">
21 <actions>
13 <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action> 22 <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action>
14 <action type="shell_command">make LIBS="-L$INSTALL_DIR/zlib/lib -lz"</action> 23 <action type="shell_command">make LIBS="-L$ENV[ZLIB_PATH] -lz"</action>
15 <action type="move_file"> 24 <action type="move_file">
16 <source>sickle</source> 25 <source>sickle</source>
17 <destination>$INSTALL_DIR/bin</destination> 26 <destination>$INSTALL_DIR/bin</destination>
18 </action> 27 </action>
19 <action type="set_environment"> 28 <action type="set_environment">