Mercurial > repos > nilesh > rseqc

diff read_NVC.xml @ 13:a7f9084572fe draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author: iuc
date: Sat, 10 Dec 2022 11:21:47 +0000
parents: 57fad5deeb8e
children: b21f0167e197
--- a/read_NVC.xml	Sat Dec 18 19:40:16 2021 +0000
+++ b/read_NVC.xml	Sat Dec 10 11:21:47 2022 +0000
@@ -1,9 +1,9 @@
-<tool id="rseqc_read_NVC" name="Read NVC" version="@TOOL_VERSION@">
+<tool id="rseqc_read_NVC" name="Read NVC" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
     <description>to check the nucleotide composition bias</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>rseqc_macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
 
     <expand macro="requirements" />
 
@@ -12,8 +12,9 @@
     <version_command><![CDATA[read_NVC.py --version]]></version_command>
 
     <command><![CDATA[
+        @BAM_SAM_INPUTS@
         read_NVC.py
-            --input-file '${input}'
+            --input-file 'input.${extension}'
             --out-prefix output
             ${nx}
             --mapq ${mapq}