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comparison tin.xml @ 14:b21f0167e197 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit ccb6f7edba5492f4750ef8a59c4f91eb67fdbbec
author iuc
date Wed, 22 Feb 2023 15:05:13 +0000
parents a7f9084572fe
children
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13:a7f9084572fe 14:b21f0167e197
51 intronic reads (--subtract-background)." /> 51 intronic reads (--subtract-background)." />
52 </inputs> 52 </inputs>
53 53
54 <outputs> 54 <outputs>
55 <data name="outputsummary" format="tabular" from_work_dir="summary.tab" label="TIN on ${on_string} (summary)" /> 55 <data name="outputsummary" format="tabular" from_work_dir="summary.tab" label="TIN on ${on_string} (summary)" />
56 <data name="outputxls" format="xls" from_work_dir="tin.xls" label="TIN on ${on_string} (tin)" /> 56 <data name="outputxls" format="tabular" from_work_dir="tin.xls" label="TIN on ${on_string} (tin)" />
57 </outputs> 57 </outputs>
58 58
59 <!-- PDF Files contain R version, must avoid checking for diff --> 59 <!-- PDF Files contain R version, must avoid checking for diff -->
60 <tests> 60 <tests>
61 <test expect_num_outputs="2"> 61 <test expect_num_outputs="2">
62 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/> 62 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
63 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/> 63 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
64 <output name="outputsummary" file="summary.tin.txt" ftype="tabular"/> 64 <output name="outputsummary" file="summary.tin.txt" ftype="tabular"/>
65 <output name="outputxls" file="output.tin.xls" ftype="xls"/> 65 <output name="outputxls" file="output.tin.xls" ftype="tabular"/>
66 </test> 66 </test>
67 </tests> 67 </tests>
68 68
69 <help><![CDATA[ 69 <help><![CDATA[
70 ## tin.py 70 ## tin.py