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comparison tool_dependencies.xml @ 1:f92b87abef3d

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author nilesh
date Thu, 18 Jul 2013 10:54:06 -0500
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0:924eea225dd6 1:f92b87abef3d
1 <?xml version="1.0"?>
2 <tool_dependency>
3
4 <package name="rseqc" version="2.3.7">
5 <install version = "1.0">
6 <actions>
7 <action type="download_by_url">https://www.broadinstitute.org/cancer/cga/sites/default/files/data/tools/rnaseqc/RNA-SeQC_v1.1.7.jar</action>
8 <action type="shell_command">python setup.py install --root $INSTALL_DIR/lib/rseqc</action>
9 <action type="set_environment">
10 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/rseqc/usr/local/lib/python2.7/site-packages</environment_variable>
11 </action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/lib/rseqc/usr/local/bin</environment_variable>
14 </action>
15 </actions>
16 </install>
17 <readme>
18 RSeQC version 2.3.7, documentation available at http://dldcc-web.brc.bcm.edu/lilab/liguow/CGI/rseqc/_build/html/index.html#.
19 </readme>
20 </package>
21
22 </tool_dependency>