Mercurial > repos > nilesh > rseqc

comparison junction_annotation.xml @ 14:b21f0167e197 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit ccb6f7edba5492f4750ef8a59c4f91eb67fdbbec
author iuc
date Wed, 22 Feb 2023 15:05:13 +0000
parents a7f9084572fe
children
comparison
equal deleted inserted replaced
13:a7f9084572fe 14:b21f0167e197
49 <tests> 49 <tests>
50 <test> 50 <test>
51 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 51 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
52 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/> 52 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
53 <param name="rscript_output" value="true" /> 53 <param name="rscript_output" value="true" />
54 <output name="outputxls" file="output.junction.xls" /> 54 <output name="outputxls" file="output.junction.xls" ftype="tabular"/>
55 <output name="outputr" file="output.junction_plot_r" /> 55 <output name="outputr" file="output.junction_plot_r" />
56 <output name="outputpdf" file="output.splice_events.pdf" compare="sim_size" /> 56 <output name="outputpdf" file="output.splice_events.pdf" compare="sim_size" />
57 <output name="outputjpdf" file="output.splice_junction.pdf" compare="sim_size" /> 57 <output name="outputjpdf" file="output.splice_junction.pdf" compare="sim_size" />
58 <output name="stats" file="output.splice_junction.txt" ftype="txt" lines_diff="2" /> 58 <output name="stats" file="output.splice_junction.txt" ftype="txt" lines_diff="2" />
59 </test> 59 </test>