Mercurial > repos > nilesh > rseqc

comparison FPKM_count.xml @ 12:57fad5deeb8e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:40:16 +0000
parents d7f6b3653d84
children a7f9084572fe
comparison
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11:d7f6b3653d84 12:57fad5deeb8e
1 <tool id="rseqc_FPKM_count" name="FPKM Count" version="@WRAPPER_VERSION@.1"> 1 <tool id="rseqc_FPKM_count" name="FPKM Count" version="@TOOL_VERSION@.1">
2 <description>calculates raw read count, FPM, and FPKM for each gene</description> 2 <description>calculates raw read count, FPM, and FPKM for each gene</description>
3 <expand macro="bio_tools"/> 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
59 </outputs> 59 </outputs>
60 60
61 <tests> 61 <tests>
62 <test> 62 <test>
63 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/> 63 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
64 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed"/> 64 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
65 <output name="outputxls" file="output.FPKM.xls"/> 65 <output name="outputxls" file="output.FPKM.xls"/>
66 </test> 66 </test>
67 </tests> 67 </tests>
68 68
69 <help><![CDATA[ 69 <help><![CDATA[