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comparison tool_dependencies.xml @ 8:aad08b24baff default tip

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switched to git
author nilesh
date Mon, 15 Jul 2013 14:09:29 -0500
parents 6baaaaa1f858
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7:6baaaaa1f858 8:aad08b24baff
9 <action type="set_environment_for_install"> 9 <action type="set_environment_for_install">
10 <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" toolshed="http://testtoolshed.g2.bx.psu.edu"> 10 <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" toolshed="http://testtoolshed.g2.bx.psu.edu">
11 <package name="zlib" version="1.2.8" /> 11 <package name="zlib" version="1.2.8" />
12 </repository> 12 </repository>
13 </action> 13 </action>
14 <action type="download_by_url">http://sourceforge.net/projects/bio-bwa/files/bwa-0.7.5a.tar.bz2</action> 14 <action type="shell_command">git clone https://github.com/lh3/bwa.git</action>
15 <action type="shell_command">cd ./bwa &amp;&amp; make LIBS="-L$ZLIB_PATH -lm -lz -lpthread"</action>
15 <action type="move_file"> 16 <action type="move_file">
16 <source>.</source> 17 <source>bwa/bwa</source>
17 <destination>$INSTALL_DIR</destination> 18 <destination>$INSTALL_DIR/bin</destination>
18 </action> 19 </action>
19 <action type="set_environment"> 20 <action type="set_environment">
20 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
21 </action> 22 </action>
22 </actions> 23 </actions>