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comparison yaha.xml @ 4:e61ba2a4b8d9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 442d981e7d3a5634063cfc26bc29c83d88d697cd-dirty
author mvdbeek
date Thu, 05 Jan 2017 08:24:22 -0500
parents bcba667aef5b
children
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3:bcba667aef5b 4:e61ba2a4b8d9
24 #pass ## augment with pre-built index if considered useful 24 #pass ## augment with pre-built index if considered useful
25 #end if 25 #end if
26 yaha 26 yaha
27 -x '$index_path' 27 -x '$index_path'
28 #if str($readtype.single_or_paired) == "se": 28 #if str($readtype.single_or_paired) == "se":
29 -q '$reatype.input_single' 29 -q '$readtype.input_single'
30 #else: 30 #else:
31 -q <(cat '$readtype.input_paired.forward' '$readtype.input_paired.reverse') 31 -q <(cat '$readtype.input_paired.forward' '$readtype.input_paired.reverse')
32 #end if 32 #end if
33 $outformat stdout 33 $outformat stdout
34 -t \${GALAXY_SLOTS:-1} 34 -t \${GALAXY_SLOTS:-1}