Mercurial > repos > mvdbeek > test_sra

changeset 12:0214e6c44ac2 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 07:25:33 -0400
parents 833f4feaee33
children f46eda49fbe0
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Aug 14 13:34:26 2015 -0400
+++ b/tool_dependencies.xml	Sat Aug 15 07:25:33 2015 -0400
@@ -3,9 +3,8 @@
   <package name="sra_toolkit" version="2.5.2">
     <install version="1.0">
       <actions>
-<!--        <action type="make_directory">src</action>
         <action type="make_directory">build</action>
-        <action type="change_directory">src</action> -->
+        <action type="change_directory">src</action>
         <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
         <action type="shell_command">
             LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib
@@ -30,7 +29,6 @@
             ./vdb-config -s "/repository/user/main/public/cache-enabled=false"
             ./vdb-config -s "/repository/user/main/public/root=$INSTALL_DIR"
         </action>
-<!--        <action type="change_directory">../src</action> -->
         <action type="set_environment">
             <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
         </action>