Mercurial > repos > mvdbeek > test_sra

comparison tool_dependencies.xml @ 4:c01e4b9ccbc6 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Fri, 14 Aug 2015 12:55:33 -0400
parents fb21b2e48a1e
children 167041a5893b
comparison
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3:fb21b2e48a1e 4:c01e4b9ccbc6
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="make_directory">src</action> 6 <action type="make_directory">src</action>
7 <action type="make_directory">build</action> 7 <action type="make_directory">build</action>
8 <action type="change_directory">src</action> 8 <action type="change_directory">src</action>
9 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action> 9 <action type="download_file">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action>
10 <action type="shell_command"> 10 <action type="shell_command">
11 tar -xf ../2.5.2.tar.gz 11 tar -xf ../2.5.2.tar.gz
12 rm 2.5.2.tar.gz 12 rm 2.5.2.tar.gz
13 mv sra-tools-2.5.2 sra-tools 13 mv sra-tools-2.5.2 sra-tools
14 </action> 14 </action>
15 <action type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action> 15 <action type="download_file">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
16 <action type="shell_command"> 16 <action type="shell_command">
17 tar -xf ../1.1.3.tar.gz 17 tar -xf ../1.1.3.tar.gz
18 rm 1.1.3.tar.gz 18 rm 1.1.3.tar.gz
19 mv ngs-1.1.3 ngs 19 mv ngs-1.1.3 ngs
20 </action> 20 </action>
21 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action> 21 <action type="download_file">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
22 <action type="shell_command"> 22 <action type="shell_command">
23 tar -xf ../2.5.2.tar.gz 23 tar -xf ../2.5.2.tar.gz
24 rm 2.5.2.tar.gz 24 rm 2.5.2.tar.gz
25 mv ncbi-vdb-2.5.2 ncbi-vdb 25 mv ncbi-vdb-2.5.2 ncbi-vdb
26 </action> 26 </action>