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comparison tool_dependencies.xml @ 9:9c04607bbb08 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Fri, 14 Aug 2015 13:23:46 -0400
parents ba27f87d7c36
children 472f8a7e13b3
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8:ba27f87d7c36 9:9c04607bbb08
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="sra_toolkit" version="2.5.2"> 3 <package name="sra_toolkit" version="2.5.2">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="make_directory">src</action> 6 <!-- <action type="make_directory">src</action>
7 <action type="make_directory">build</action> 7 <action type="make_directory">build</action>
8 <action type="change_directory">src</action> 8 <action type="change_directory">src</action> -->
9 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action> 9 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
10 <action type="shell_command"> 10 <action type="shell_command">
11 LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib 11 LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib
12 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build 12 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
13 make 13 make