Mercurial > repos > mvdbeek > test_sra

comparison tool_dependencies.xml @ 11:833f4feaee33 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Fri, 14 Aug 2015 13:34:26 -0400
parents 472f8a7e13b3
children 0214e6c44ac2
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10:472f8a7e13b3 11:833f4feaee33
20 make 20 make
21 make install 21 make install
22 </action> 22 </action>
23 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action> 23 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action>
24 <action type="shell_command"> 24 <action type="shell_command">
25 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build 25 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
26 sed -i -e "109s/-static//" tools/copycat/Makefile 26 sed -i -e "109s/-static//" tools/copycat/Makefile
27 make 27 make
28 make install 28 make install
29 cd $INSTALL_DIR/bin 29 cd $INSTALL_DIR/bin
30 ./vdb-config -s "/repository/user/main/public/cache-enabled=false" 30 ./vdb-config -s "/repository/user/main/public/cache-enabled=false"