Mercurial > repos > mvdbeek > test_sra

comparison tool_dependencies.xml @ 7:5aca2a1c5f2e draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Fri, 14 Aug 2015 13:06:29 -0400
parents a5ab0e9215c5
children ba27f87d7c36
comparison
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6:a5ab0e9215c5 7:5aca2a1c5f2e
9 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action> 9 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action>
10 <action type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action> 10 <action type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
11 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action> 11 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
12 <action type="change_directory">../src</action> 12 <action type="change_directory">../src</action>
13 <action type="shell_command"> 13 <action type="shell_command">
14 ls
14 mv sra-tools-2.5.2 sra-tools 15 mv sra-tools-2.5.2 sra-tools
15 mv ngs-1.1.3 ngs 16 mv ngs-1.1.3 ngs
16 mv ncbi-vdb-2.5.2 ncbi-vdb 17 mv ncbi-vdb-2.5.2 ncbi-vdb
17 LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib 18 LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib
18 cd $INSTALL_DIR/src/ncbi-vdb 19 cd $INSTALL_DIR/src/ncbi-vdb