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comparison tool_dependencies.xml @ 1:29892b1d24b9 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Fri, 14 Aug 2015 12:29:26 -0400
parents ec8b334b5ebb
children 2c5483e80fb7
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0:ec8b334b5ebb 1:29892b1d24b9
19 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build 19 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
20 make 20 make
21 make install 21 make install
22 cd $INSTALL_DIR/src/sra-tools 22 cd $INSTALL_DIR/src/sra-tools
23 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR 23 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR
24 sed -i -e "109s///" tools/copycat/Makefile 24 sed -i -e "109s/-static//" tools/copycat/Makefile
25 make 25 make
26 make install 26 make install
27 cd $INSTALL_DIR/bin 27 cd $INSTALL_DIR/bin
28 ./vdb-config -s "/repository/user/main/public/cache-enabled=false" 28 ./vdb-config -s "/repository/user/main/public/cache-enabled=false"
29 ./vdb-config -s "/repository/user/main/public/root=$INSTALL_DIR" 29 ./vdb-config -s "/repository/user/main/public/root=$INSTALL_DIR"