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comparison tool_dependencies.xml @ 12:0214e6c44ac2 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 07:25:33 -0400
parents 833f4feaee33
children f46eda49fbe0
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11:833f4feaee33 12:0214e6c44ac2
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="sra_toolkit" version="2.5.2"> 3 <package name="sra_toolkit" version="2.5.2">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <!-- <action type="make_directory">src</action>
7 <action type="make_directory">build</action> 6 <action type="make_directory">build</action>
8 <action type="change_directory">src</action> --> 7 <action type="change_directory">src</action>
9 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action> 8 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
10 <action type="shell_command"> 9 <action type="shell_command">
11 LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib 10 LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib
12 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build 11 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
13 make 12 make
28 make install 27 make install
29 cd $INSTALL_DIR/bin 28 cd $INSTALL_DIR/bin
30 ./vdb-config -s "/repository/user/main/public/cache-enabled=false" 29 ./vdb-config -s "/repository/user/main/public/cache-enabled=false"
31 ./vdb-config -s "/repository/user/main/public/root=$INSTALL_DIR" 30 ./vdb-config -s "/repository/user/main/public/root=$INSTALL_DIR"
32 </action> 31 </action>
33 <!-- <action type="change_directory">../src</action> -->
34 <action type="set_environment"> 32 <action type="set_environment">
35 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 33 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
36 </action> 34 </action>
37 </actions> 35 </actions>
38 </install> 36 </install>