# HG changeset patch
# User mvdbeek
# Date 1483709768 18000
# Node ID afe2a09f802b1060b62130262ba954cb4b9cdc22
# Parent  df634cd04be7a248fd871643bb6663642596198a
planemo upload for repository https://github.com/ListerLab/TEPID commit 48d24b91382cfbe7749d131657efbad47a28f569-dirty

diff -r df634cd04be7 -r afe2a09f802b tepid-discover.xml
--- a/tepid-discover.xml	Fri Jan 06 08:23:13 2017 -0500
+++ b/tepid-discover.xml	Fri Jan 06 08:36:08 2017 -0500
@@ -52,16 +52,16 @@
     </inputs>
     <outputs>
         <data name="insertions_out" format="bed" label="tepid_discover insertions on ${on_string}">
-            <filter>not insertions</filter>
+            <filter>not deletions</filter>
         </data>
         <data name="insertion_reads_out" format="txt" label="tepid_discover reads supporting insertions for ${on_string}">
-            <filter>not insertions"</filter>
+            <filter>not deletions</filter>
         </data>
         <data name="deletions_out" format="bed" label="tepid_discover deletions on ${on_string}">
-            <filter>not deletions</filter>
+            <filter>not insertions</filter>
         </data>
         <data name="deletion_reads_out" format="txt" label="tepid_discover reads supporting deletions for ${on_string}">
-            <filter>not deletions</filter>
+            <filter>not insertions"</filter>
         </data>
     </outputs>
     <tests>
@@ -74,6 +74,22 @@
             <output name="insertion_reads_out" file="insertion_reads_test.txt"/>
             <output name="deletion_reads_out" file="deletion_reads_test.txt"/>
         </test>
+        <test>
+            <param name="bowtie2_bam" value="conc.bam"/>
+            <param name="split_bam" value="split.bam"/>
+            <param name="te_annotation_bed" value="TAIR9_TE.bed.gz" ftype="bed"/>
+            <param name="deletions" value="true"/>
+            <output name="deletions_out" file="deletions_test.bed"/>
+            <output name="deletion_reads_out" file="deletion_reads_test.txt"/>
+        </test>
+        <test>
+            <param name="bowtie2_bam" value="conc.bam"/>
+            <param name="split_bam" value="split.bam"/>
+            <param name="te_annotation_bed" value="TAIR9_TE.bed.gz" ftype="bed"/>
+            <param name="insertions" value="true"/>
+            <output name="insertions_out" file="insertions_test.bed"/>
+            <output name="insertion_reads_out" file="insertion_reads_test.txt"/>
+        </test>
     </tests>
     <help><![CDATA[
 TEPID -- transposable element polymorphism identification