Mercurial > repos > mvdbeek > tepid_discover
comparison macros.xml @ 0:a5ef6470e54d draft
planemo upload for repository https://github.com/ListerLab/TEPID commit c36c280ed14c7afaf6859d37656a7b91ba6944b3-dirty
| author | mvdbeek |
|---|---|
| date | Thu, 15 Dec 2016 08:33:53 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:a5ef6470e54d |
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| 1 <macros> | |
| 2 <xml name="requirements"> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.8.0">tepid</requirement> | |
| 5 <yield/> | |
| 6 </requirements> | |
| 7 </xml> | |
| 8 <token name="@WRAPPER_VERSION@">0.8.0</token> | |
| 9 <token name="@REFERENCES@"> | |
| 10 <![CDATA[ | |
| 11 ------ | |
| 12 This tool is part of the `TEPID`_ pipeline from the `Lister laboratory`_. | |
| 13 .. _TEPID package: https://github.com/ListerLab/TEPID | |
| 14 .. _Lister laboratory http://listerlab.org/ | |
| 15 ]]> | |
| 16 </token> | |
| 17 <token name="@PROC@">-p \$GALAXY_SLOTS</token> | |
| 18 <token name="@NAME@">-n '$bowtie2_bam.element_identifier'</token> | |
| 19 <token name="@LINK_CONC@"><![CDATA[ | |
| 20 ln -f -s '$bowtie2_bam' conc.bam && | |
| 21 ln -f -s '$bowtie2_bam.metadata.bam_index' conc.bam.bai && | |
| 22 ]]></token> | |
| 23 <xml name="citations"> | |
| 24 <citations> | |
| 25 <citation type="doi">10.7554/eLife.20777</citation> | |
| 26 <yield /> | |
| 27 </citations> | |
| 28 </xml> | |
| 29 </macros> |